Protein Info for GFF892 in Variovorax sp. SCN45

Annotation: FIG016502: iron uptake protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 107 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 43 to 64 (22 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details PF11804: DUF3325" amino acids 8 to 102 (95 residues), 60.6 bits, see alignment E=7.2e-21

Best Hits

KEGG orthology group: None (inferred from 64% identity to del:DelCs14_3644)

Predicted SEED Role

"FIG016502: iron uptake protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (107 amino acids)

>GFF892 FIG016502: iron uptake protein (Variovorax sp. SCN45)
VPDAILLLLAVLANIAGLGWLALAMDVHWEQAFGPVPASRGTVVLLRVLGVAGLVVSLLL
CLAVDHASMASLVWFMTLAGAALTIAFTAAWKARWLALLVAWVRPAS