Protein Info for GFF885 in Xanthobacter sp. DMC5

Annotation: Chromate transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 transmembrane" amino acids 31 to 51 (21 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 129 to 152 (24 residues), see Phobius details amino acids 164 to 195 (32 residues), see Phobius details PF02417: Chromate_transp" amino acids 29 to 187 (159 residues), 129.3 bits, see alignment E=7.5e-42

Best Hits

KEGG orthology group: K07240, chromate transporter (inferred from 78% identity to xau:Xaut_4177)

Predicted SEED Role

"chromate transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>GFF885 Chromate transport protein (Xanthobacter sp. DMC5)
MSVTKPPIPAPSPAPDAPQGAPATQVSLLEIFITFLIIGGISFGGGVVAYLRNALVVEKG
WLDEEEFLTALEISQALPGLNATNMSVIVGDRLRGPVGAIVGFLGMTLPGGLLVFALGIF
YVSNHGNPAMHAILAGIGAAAVGLLAAVTVQIGHKQLEHLREILLILITVVLVSFLHVSL
VLVLLTVLPLALFIYRPGRGEVDEP