Protein Info for GFF877 in Variovorax sp. SCN45

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 transmembrane" amino acids 42 to 63 (22 residues), see Phobius details amino acids 72 to 89 (18 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 123 to 140 (18 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 211 to 230 (20 residues), see Phobius details amino acids 236 to 253 (18 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details amino acids 294 to 313 (20 residues), see Phobius details PF09925: DUF2157" amino acids 10 to 147 (138 residues), 91.9 bits, see alignment E=1.7e-30

Best Hits

KEGG orthology group: None (inferred from 48% identity to dac:Daci_2447)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>GFF877 putative membrane protein (Variovorax sp. SCN45)
MNIRLALYELARAHRLTPPRMHALFALAELDAQPPQLPQRFWRVVALLAAGLGGFGIVMW
VAANWGSLGRTGQFALLQGWVLLTAFAAWRSAALRTSMGLLCLLGTGALFAYYGQTYQTG
ADAWQLFALWAVLSLPLCLGVRSDVLWFPWVVVACSAISLWVYAHTGHRWRFDNTDLPIH
LIGWGLGVLLIAALSPWARSWVGETHWSQRLAMLALTVSVTLNSLVALFLGSEDSPHYFL
GLALMIGAGGMLMQRRWFDIVGLSAAVLCVDTLLVAGLVRILFDGGGVDTMSRLLIIGLV
AAGLLAVSVALVMRRQNTVLAAAQRDGAAA