Protein Info for GFF863 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 84 to 101 (18 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 188 to 212 (25 residues), see Phobius details amino acids 236 to 257 (22 residues), see Phobius details amino acids 270 to 299 (30 residues), see Phobius details amino acids 303 to 329 (27 residues), see Phobius details PF02653: BPD_transp_2" amino acids 54 to 306 (253 residues), 125.4 bits, see alignment E=1.2e-40

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 34% identity to rca:Rcas_1632)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (344 amino acids)

>GFF863 no description (Variovorax sp. SCN45)
MTASRVLPVLRVVVFVCFALLLCALAFMGAGLDVGELFTGILDGAFLRDGAVHQGLRWAM
PLFITATGVAIAFRAGFFNIGAQGQFYVGSIFAAFTAEWLAGGPAWLVVACCLLAGMLGG
ALWAMWPGLLRLRSGTDEVITTLMGNFLAGLLLVYVTSGPLKDPTGSGQQASSRPIADAY
RISDSLGVSPLIVVLTLLVFALSWLLANRTALGIVANLAGRNPTMVAWQGARVGRIGLFS
FLVSGALAGLAGGIELLGPNGRLASGFLPAHGFTAILIALVAQLTIVGTAVSALFFGALA
SAALYLPVMAGMPAAAIEVINATIALFITSRAKWLDKLLTRKPA