Protein Info for GFF862 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 32 to 51 (20 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 86 to 108 (23 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 186 to 208 (23 residues), see Phobius details amino acids 222 to 249 (28 residues), see Phobius details amino acids 266 to 281 (16 residues), see Phobius details PF02653: BPD_transp_2" amino acids 5 to 255 (251 residues), 96.3 bits, see alignment E=8.7e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (300 amino acids)

>GFF862 hypothetical protein (Variovorax sp. SCN45)
MTDTLVSILISGTPLIYVTLAGVLAQRAGIWNLGLEGLMIIGSCALIVGIVQTGSFAQAM
LIAVGLCVAASALLWWVVERLKANPIIAGLGLTGLGLGGTSLAIQALYDSEATVTAPFGI
PKLNSLFGADLGPFGGLSVFVLLMPVAVWLVWLLLERTRLGLQMSASGEHPFAARSVGVN
PSRMRLLALALGGVLCAIGGAELAGGSLQIFSQNMTAGRGFMAFAAVIFGAGGALGATAA
ALFFAVVSALGIRAQLVYGGAISNDLLQSLPYLATIFGVWLSTRLRGGLGSIRGTAEMRD