Protein Info for GFF860 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 52 to 73 (22 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 175 to 197 (23 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 308 to 328 (21 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details amino acids 398 to 417 (20 residues), see Phobius details PF07690: MFS_1" amino acids 13 to 355 (343 residues), 73.9 bits, see alignment E=6e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>GFF860 hypothetical protein (Sphingobium sp. HT1-2)
MTAINRHRLFWLSVLALFTASMSASLRAAVASSLKAEWIDPIAPIAAGEMIGAALGSAFL
GFSITVFVVSAFLDTIGIRRVLIGCGIAFLIGTTLIVGAGSMATGMTVYHLVWLGMLLSG
IGWGFAEASINPLTARLYPEDTTHRLNVLHAWYPGGLIVGGLAGVFLASALPWQAIMALA
YIPAIGVVLIASTTRFPAPPATAGSRAMKDMMLEVVRRPSFFIWFGAMFLTASSELAPGQ
WLDVALSNRVGMRGILLLVYVSALMFVFRHFAGRIAGRLSNPGLLWVSSLLAAIGLFMLS
QAQSPASAILASTVWGLGVCAMWPTMLASVAERYPRGDAWALGLVGSAGALASFFVLPRL
GEMFDQAKVELAGGPEAFTRLTGPALRAVEDAAASQSFARLAFVPLILLVVFGLIWLSDR
RAGRRAEAVA