Protein Info for GFF853 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 28 to 49 (22 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 90 to 113 (24 residues), see Phobius details amino acids 129 to 153 (25 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 213 to 232 (20 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 275 to 297 (23 residues), see Phobius details PF13367: PrsW-protease" amino acids 87 to 280 (194 residues), 104.3 bits, see alignment E=3.1e-34

Best Hits

KEGG orthology group: None (inferred from 84% identity to vpe:Varpa_4624)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>GFF853 hypothetical protein (Variovorax sp. SCN45)
MSINAPIFDKDQAAWPVGTDSFFQPQRAAFWVLAALIVNGLFYTVSMFSMGFRVVPVTAF
LGLLVWGLYTLLFLAAFRTLDLLEQHPPEAFILAFAWGGMGAVYFAAPANIAIQSLCAKL
ISPDFVAVWGPAIAGPITEEFLKIAGVILLVLVARNQFQTYLSVLIVGALAGLGFQVIEN
LSYTVNASMHFPLENQVYPVFLNLLTRGLMSGLWSHAAYTTIASFGIAWFLLHPERPMVV
RVAAALLAFALAWAMHFIWNSPFLEDLFDNGYGEMAVLLFVKGIPVMIAAGLIWHVAARE
NGTYLHALAAVFVPERELISDDEWVRLGAPMQRYKVRREMGWTYGWRARRLKTRLQREQL
RLIRKAGTYGRGPQTLRHEIAIRQLRAELDPLIQPRQA