Protein Info for PS417_04255 in Pseudomonas simiae WCS417

Annotation: rod shape-determining protein MreC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR00219: rod shape-determining protein MreC" amino acids 2 to 266 (265 residues), 220.5 bits, see alignment E=1.3e-69 PF04085: MreC" amino acids 114 to 259 (146 residues), 143.8 bits, see alignment E=1.7e-46

Best Hits

KEGG orthology group: K03570, rod shape-determining protein MreC (inferred from 94% identity to pfs:PFLU0864)

Predicted SEED Role

"Rod shape-determining protein MreC" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UA85 at UniProt or InterPro

Protein Sequence (356 amino acids)

>PS417_04255 rod shape-determining protein MreC (Pseudomonas simiae WCS417)
MGVRLLVLVVLSVALMVVDARFALLKPVRSQMSLVLMQTYWITDLPQRLYQGVASQFGSR
TELVAENEKLKTENLLLQGRMQKLAALTEQNVRLRELLNSSALVNEKVEVAELIGMDPNP
FTHRIIINKGERDGVVLGQPVLDARGLMGQVVELMPYTSRVLLLTDTTHSIPVQVNRNGL
RAIASGTGNPERLELRHVADTADIKEGDLLVSSGLGQRFPAGYPVATVKEVIHDSGQPFA
IVRAVPTAALNRSRYLLLVFSDNRTPEERANDAAQAQEAEDKQNGTAAIVPATVPKPAFV
GPPAPTAAPAAPVATPVKPAAHSTPPAKPAVTKPAAATPAAKPPATAPATTRQREE