Protein Info for GFF83 in Variovorax sp. SCN45

Annotation: Alkanal monooxygenase alpha chain (EC 1.14.14.3)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 TIGR04027: putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family" amino acids 13 to 342 (330 residues), 551.1 bits, see alignment E=3.5e-170 PF00296: Bac_luciferase" amino acids 23 to 302 (280 residues), 145.4 bits, see alignment E=1.3e-46

Best Hits

KEGG orthology group: None (inferred from 73% identity to dac:Daci_1053)

Predicted SEED Role

"Alkanal monooxygenase alpha chain (EC 1.14.14.3)" (EC 1.14.14.3)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.14.14.3

Use Curated BLAST to search for 1.14.14.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (353 amino acids)

>GFF83 Alkanal monooxygenase alpha chain (EC 1.14.14.3) (Variovorax sp. SCN45)
LSDLSSGLPAPRRLGFFSRLLDDTTAAERYRLVAEQIAHAEALGFDSAWVAQHHFHEHEG
GLPSPFVFLAYVASRTKRIRLGTGIVTLPLENAVRVAEDAAVLDLLSGGRLEVGVGTGGT
PEAFAAFGLDSHERSAIFARQLDAVRAAWAGRPLAGGDTLYPSGAQLTERIWQATFSVSG
GTRAGQAGDGLMLSRTQPRPGHAPDAPLSELQNPIVDAYLAALPAGVAPRIVGSRSVFVA
ETRQEALRLADIGLRRSAARFAASGQAGLADRAGPRASLEELIAAYDVHVGSPDDVIASL
RADSTLDRVTDLVCQVHSVDPPHAAILRSIELIATEVAPALGIHSSSTLRETA