Protein Info for GFF829 in Variovorax sp. SCN45

Annotation: Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1272 TIGR02257: cobaltochelatase, CobN subunit" amino acids 1 to 1264 (1264 residues), 1544 bits, see alignment E=0 PF02514: CobN-Mg_chel" amino acids 143 to 1249 (1107 residues), 1270.7 bits, see alignment E=0

Best Hits

Predicted SEED Role

"CobN component of cobalt chelatase involved in B12 biosynthesis" in subsystem Coenzyme B12 biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1272 amino acids)

>GFF829 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) (Variovorax sp. SCN45)
MHLLSTQPGRFVEDDSVVTRLDQTPGDIVVLSSADTTLALLAASRTALAATDPGYPSLRL
ANLMYLKQPASLDLYIDEVLQHARVVVVDHLGAESAWAYGLQQLEKLAKRKGQQLAMFSG
DLQEDEDLLARSTAPRAVSRQLWQYMRAGGAGNALQFLRAVAFHGLGHGEAPLPPRSLPQ
VALHVPRGMDIAHTVAGIDDLRAGWHAGAPVVALVFYRSHLLSGNIVAFDAIAAALSAEG
LNPLPVALDSLKDPLCLSALRELCAAHDVQLVLNTTAFAALGQGAKNEEGASLELAGDAP
VLQVIVSGGNREDWLADSQGLRPRDIAMQIALPEMDGRIVTRAVSFKGLSHRCELTQTEV
VNYQPEPDRVAFVAELARRWCRLRALGAADKRIALILANYPGSEGRIGSGVGLDTPASVI
AILRAMQAEGYALGDPAALPEDGDALMRKLQEGIANDPAQWAARPAWQSYALADYRARLA
SLPEGMADAIDARWGTPEQDPLVRQGRFMIAGLRLGRVFVGIQPARALGTPGAADYASYH
DAELVPPHSYLAFYFWLRDAFAIDAVVHVGKHGNLEWLPGKSIALSQTCWPDAILGPMPN
VYPFIVNDPGEGAQAKRRTQAVIIDHLMPPLTRAENHGPLQDLERQVDEYYDALLVDARR
AKVLRAQILAAVRAQHLVEELGMPGAEDDAVLARVDAYLCELKETQIRDGLHVFGASPSD
RLRRDTLLALARYPAADGSGGNAGLLGALASDLLPGEGFDPLDIDAAKPWQGARPALLQS
VSADAWRHQGDTRERLELLAQRLIETRNCPPGLPRTAAVLGRIERSLAPALDACGTQELL
QLSRALQGRFVPPGPSGSPSRGRPDVLPTGRNFYAVDTRAIPTPTAWMLGLKSAAQLVER
HMQEHGDYPVAMGLSVWGTATMRTGGDDLAQAFALIGVRPKWAPGSQRVVDFEVLPTVGL
GRPRIDVTLRISGFFRDAFPSAVQMFDAAVQAVAAQEDEDAERNPIRARILREAAALEAQ
GVEPEAARLQAGWRVFGSAPGSYGSGLQPLFDHGDWQTDDDLSKAYVGGSAHAYGQGSDG
VPAAGALVRRLRAMDVVMQNQDSREHDLLDSNDYYQFQGGMAAAVRHLSGQQPAMYHGDH
GNPQAPRVRTLKEEIGRVIRSRVVNPKWIDGVKRHGYKGAFEMAATVDYLFGFDATARVV
GDHQYSMVADAYVLDEATRDFVSEHNPRALHDMLSRLLEAMQRGLWQSPGDYRTQLENLL
LDQEQRMEGSLR