Protein Info for GFF821 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 transmembrane" amino acids 13 to 32 (20 residues), see Phobius details amino acids 40 to 61 (22 residues), see Phobius details amino acids 74 to 104 (31 residues), see Phobius details amino acids 111 to 133 (23 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 180 to 205 (26 residues), see Phobius details PF01891: CbiM" amino acids 2 to 205 (204 residues), 60.6 bits, see alignment E=9.8e-21

Best Hits

KEGG orthology group: None (inferred from 82% identity to rva:Rvan_1839)

Predicted SEED Role

"Predicted cobalt transporter CbtC" in subsystem Coenzyme B12 biosynthesis or Transport of Nickel and Cobalt

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (227 amino acids)

>GFF821 hypothetical protein (Xanthobacter sp. DMC5)
MHIEPGLVDGAKIGLSYVTAAAAGGYALKLAYEAARERGVLSLAGRTLATTALVFSFFEV
LPHYPVGVSEVHLILGSTLFLMFGAAPAALGLAFGLLIQGLFFAPFDLPQYGMNVTTLLV
PLFGVAAVARRIVAPGTPYVELKYGQALALSTTYQAGIVGWVAFWAVYGQGFASENIASV
ATFGGAYMLVIIVEPLVDLAVLAAAKALHGAFKGGNPLLERRLYDAA