Protein Info for GFF817 in Xanthobacter sp. DMC5

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 48 to 66 (19 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 205 to 235 (31 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 117 to 284 (168 residues), 102.5 bits, see alignment E=1.2e-33

Best Hits

Swiss-Prot: 47% identical to SSUC_ECOLI: Putative aliphatic sulfonates transport permease protein SsuC (ssuC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 66% identity to tcu:Tcur_1374)

MetaCyc: 47% identical to aliphatic sulfonate ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-56-RXN [EC: 7.6.2.14]

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>GFF817 Putative aliphatic sulfonates transport permease protein SsuC (Xanthobacter sp. DMC5)
MTVQQPPPAFLPAAPGQPPQAVVLDLVDLSPRGGETPARSRFGKSARFASRALVPALLLA
VWQASSNLGLVAPEVLPSPAEIIAAYAELIRTGELQAAIPASLARALTGLALGASVGLVL
GLFAGLWRVGEELFDAPLQMLRTIPFIAMIPLFIIWFGIGEQAKIALIFGATIFPVYLNT
YSGVRGVDQKLIEAARVFGLSHGRIATRVIIPTALPSILVGLRFAAGVSLLALVAAEQIN
ARSGIGFILINANQNQRTDIIIAGIIVYALLGIAIDLVMRVVERLALPWRPSLVLA