Protein Info for GFF808 in Xanthobacter sp. DMC5

Annotation: Dimethyl-sulfide monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 TIGR03860: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family" amino acids 16 to 435 (420 residues), 516.1 bits, see alignment E=3.3e-159 PF00296: Bac_luciferase" amino acids 25 to 389 (365 residues), 143.4 bits, see alignment E=5.3e-46

Best Hits

KEGG orthology group: None (inferred from 61% identity to met:M446_1590)

Predicted SEED Role

"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (459 amino acids)

>GFF808 Dimethyl-sulfide monooxygenase (Xanthobacter sp. DMC5)
MTRQIRLNGFIGFSPVHLSPGLWAHPASRGADYNTLDYWVDLAKVLERGKFDALFIADGI
GVHDVYGGNADAAIRSGAQFPKLDPLMLVSALAHETKDLGFGITASTSHELPAVLARRFS
SLDHFTQGRLGWNIVTGYSDSGARAVGREKVIAHDTRYDRADEFLEVAYKLWEGSWEDAA
VVRDRASGTFADPSRVHRVRHEGRHFDIDTIHLTEPSLQRTPYLFQAGASPRGRAFAARH
AEAVFVGGPTPASIAPGIVDIRARAAALGRDPRDIAVFTLATAIPARSRAEAEDKLADYR
RYTDPDGVLALFSGWTGIDFSAFDLDAPLTLSEVKENAVQSLLETFTVAEPGRVWTLREI
IAHNGIGGRGPLFAGTPADIADELEAWVAAADVDGFNLSHAFFPDTFTDVVDLLVPELQR
RGLYKQDYAPGTLRGKLSGSDRLKETHAGAAYRRLSAAA