Protein Info for GFF802 in Sphingobium sp. HT1-2

Annotation: Sulfate permease, Trk-type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 34 to 51 (18 residues), see Phobius details amino acids 57 to 79 (23 residues), see Phobius details amino acids 100 to 117 (18 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 150 to 174 (25 residues), see Phobius details amino acids 186 to 208 (23 residues), see Phobius details amino acids 403 to 436 (34 residues), see Phobius details amino acids 449 to 505 (57 residues), see Phobius details amino acids 507 to 528 (22 residues), see Phobius details amino acids 535 to 553 (19 residues), see Phobius details amino acids 573 to 592 (20 residues), see Phobius details PF03600: CitMHS" amino acids 24 to 542 (519 residues), 227.2 bits, see alignment E=3.2e-71 amino acids 491 to 590 (100 residues), 46.2 bits, see alignment E=3.6e-16 PF02080: TrkA_C" amino acids 227 to 294 (68 residues), 34 bits, see alignment E=2.2e-12 amino acids 316 to 383 (68 residues), 31.8 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: None (inferred from 85% identity to sjp:SJA_C1-01710)

Predicted SEED Role

"Sulfate permease, Trk-type" in subsystem Cysteine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (593 amino acids)

>GFF802 Sulfate permease, Trk-type (Sphingobium sp. HT1-2)
MHFITALLGIYRAEIGLVILACMFVAFVRERYSPTVVSVLGACAFALLGLLDEKSLFSVF
SNSAPLTVGAMFVLSGALIRTGTINRIADLVMVRAQKHPRLALIEVAVGTVLLSAFLNNT
PVVVLLIPIMFRLAQATAYPVKKLLIPMNAVAVMGGCVTLIGTSTNLIVAGIAAEQGMQP
FGIFDITPYGLAGTIAGVIGLACLSFLLPSDPPSIAGENGGNVQEYLTELVVTPDSEVVG
REIGDLSVLGRSVTLIGLKRAGEIRRHDLEQEELHVGDRLIVRADGTAIMTLRESGDFEL
GIAADSETSAREGTVIEAMVAPSHPSIGERLIDIPFLHALRVRLIGIHRARHLPGPDLAD
TRVRGADRLLVAGSDDAMRSLKDNPNLIGVDISRTRAFRPRKAWIAILAMAAVVILSALD
VIGIGLAAFIAVGVILVTRCIDAEEAWAAIDGDVLILIFAMLAVGLALEQAGSVALMVGW
ITPLMQVAPQWSLVFIVYFAALILSELLSNNAVAALLTPLTIALAHQLGTDPRPLVIALM
IGASACFATPIGYQTNALVYAAGDYRFADFVRIGVPLNLIVGTAVCAALVILG