Protein Info for GFF793 in Variovorax sp. SCN45
Annotation: Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (4271 amino acids)
>GFF793 Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system (Variovorax sp. SCN45) MNTHEGHNSRSRKPGAVVHARSFRISPLAQAMALALAAGAATTAAVPAHAQRAFSPTWFN AKGAAQATATATGMLPNGMPVASLMSPAGQQQRANEQLQQSIGNLNLAARGIAAQQAAQA AARAAAQNDPSVPDGLAEGGLKVDTNSLTAGWLNARPLGGDSQKNVDGRTVVTVEQTADK AILNWETFNVGKNTTVAFAQQKDWAVLNKVNDPQARPSQIQGRIKADGTVMVANRNGIVF SGTSQVDTRNLVAAATQVDDAQFQSSGVYGNGLAPNFRNANGRVEVQAGARISTPAPTSA TQGGGYVLLLGSEVRNAGEIATPSGQTLMAAGDSFSIRKGVGTEGNQASTTRGNEVAVTL AADSKAGLVVNTGLIQAPTGDVTLAGREVVQNGVILSSTSVNTRGTVHLAAVGTAGKVTL GEGSTTAVVLDTSGTTALDSQRTALMAPAVLQDGQNFSLAGNDRRDLSRVEVASGGTVEF QKDSLTLATGGQVVVDAKQRSLVREGARIDVSGAVGVKLTMESNNVKINVQGNEQRDAPL NRDSKNLNNNDLWIDRRTLVFVPGGTNGYQGERWYTGGGLLEVGGYLGTQGHTVGEWMAQ GGAVSFTGGDVVTQRGSSINLSGGTLDVLTGTINQSWLKGADGRLYEVSKAPGDLKYTGV YKGFEDEHVRWGKGTTGFFYNPLIGPQKRLENGYTVGRDAGVLIVGTKGAVLEGDIVGET FQGDRQTQAPQAGLDGYRQSSGAAPQRGQLVVGSYDAYFDKSTGTLYRRLDPAGIKNVVL GNTAQAIAAELDLSTALPAERRDTLYLDTDQLSGFRLGAVRVAATESIAVTSALQAGNGG NITLYGPSVKVDADLVAHGGSIQLGNVLEQISNNYLKDTTYIKPPADGRATVVLAGGARL DTSGLWANVLKNPLDAGGLAYRNGGSVSVRSTGDVVLGSGSLVDVSSGAGLLAKAKQQGG KGGSVTLEADGFNSGNGHVVLDGAALRGHGVDGGGTLTVQANRIAVGDTSGAVLADMLML GADFFDKGFSRYALIGNHGLTVADGAQIDVTMPVLRFGANAQDVATGGKPADALEAWTPP LYQEDAAKAVLTQRKGASLSLQAGTATTQATELQAVQAVVGKGAAINVDPGQAIEVRSTG QLTVEGTLRASAGRIVLKTVDLGDLEADKANAQAHARSIWIGEQAVLDVSARAATATDVN GKRYGLVRDGGSILIGGEIDTARGMATATQDFIVVRPGALLDASGTHAVLDVPGMGATDV ASNGGSISLASYNGLYLDGTLRAFAGGQRAAGGTLSVALDTPGLRLHLDPLQQAEDRVRR HRVLVLGNEQGAPLAPDTLRPGVDDGALEYGQARLGADTVRRGGFDNLSLFSGSTLALED GLDLRMRQSLQIYAGGLALGKGAPDDAQVALSGAYVRLAGSMTSFTREVLRAPSAAGGVA RVPSGTRLTLSGDLIDVRDGMGFGVAGKVAMLDSQSESPVLDLAAFGQVTLDSTGDLRFL QGRLDVGTSTSLIVPGSLTLRAAQIYPATGVVALVSAGMGRDGKYRPDTRLRIEGTGTTP AVPYSAFGDLTMRADVIEQGGVVRTPLGHLTLGDALTTQTRLLPGSVTSVSGEGLSMPYG GTVDGINYLYNGKQVTLTGVGAGDSFNRNLTIGLSFMGASVQGQEGATLDLSGGGNLTGT GFVSGRGGSTDARFSPLMQVGANGGFTLPGLATNPVYAVVPGVQPAVAPTGAEKGAVDPL VGQQITIGAGVPGLPAGTYTLMPSTYALQKGAFRVELNGAAGLGASTGTQAMRNGSWLTA AQLGVGRTGIGDTLFRQAIVTSADVLRSYSQYNETGYADFVRADALRVGVPRAMLPADAR NLHLRLEPGAGAEAFRFAGIARFQPAEGGRGGSVTADGSSATTGLEVVAAGAPATPGFKG VTYDAGALSGMNVSRLVIGGLQAADYGQGGSVVKTGDNIQSVVVRQGAVLSAPEVFLGVV GTGAESALSVVVEQGAHINTIGRGKAAYDAADGFVYDASGQMLMVSNGRVSTLPVPASEG TRDNRSLQVGVCSSASCSGQTELYSEGTIAMVTPDRFEMGDAVRYGTRHLTLAVRGINVG DNAVLAAAAANNTLPPGLAMSQSVLDRLLRGDRQYGAPALETLELSASGGVNFFGTAALD TLDPATGKSTMAQLVLATPAIYGQGGADDVATIRTGRLVWQSMNTAPTSVASGGAGTGGG TLNIEAERIEFGYGPNSQPSGRDDTARLVLGFADVNLKAGERVSANHKGSLSVYQSQGAY DAGNGYAYSGGNLNIVAPLLTGEAGSVNRITAGGALRVSAPSGAAVAATGDAALGAELSL RGHDVTLDTAVALPSGKLTVSAERDLTLTDRAVLDLAGRKLAFNDVTKYSAGGDLVLESL HGNLRQAAGSVIDISAQNNRAGTLKAMALDDAAGASTGVVDLQGRILGASSGRYDAGGTL VPFLAGSVEVRARQLGDAEFAALNQRLNDGGVFGARSFQLRQGDLTIGNGVKAGEVNVSL DKGSLTVTGTIDASGERVGRINLAAGNSLTLAGSAVLDAHGSTLRVDSHGKIIDSPNRAM VELTSNNGQLTLASGARIDLRHGTNAKAGGEPGQNDGMARGTLELNAGRTGETSGDIRID ASGSIAIEGARSIAVNGTWRYDDARFGTDTAASGRPYQVIDQAYLDAKHLKSTAFIDNAL ANTALMNGRLAGLNNARYADAFHLRPGVEIVSRTPDGDMVVQGDIDLSGYRYASANPHTQ KTGVYGSGEVGKLAIRAGGNLDIFGSINDGFMPPPATQDDRGWLLLPGTNLLGGDVVVPR GGVVLADGTVFEGGVTLNYDLPIRAAGFDVGQLIPAPSVLAAPLELKAGTVLSADVRDAS GALLYAAGSIVSGANVTLPVGTRLGAGMRLPSNATLSGVVWPKGVPLPGDGRKYVMNGAV TLPLGAVLPAGTDIKLPEGVDSVNLRPDGAGRLWAAAAMLPEGSQSWSVRLLAGADLDAA DNRIVQVHPAAGQGNLRLADSHYGLFGKLLPPKGTQLWTQFAQDDLAAIGIEVKAGEPID AQWLEDMGAGTIEALCAGTPAYCVLKSAWGWSQKAVDELAEAEIVVKLGDPVDPAIVGNV DDFCMGTPTYCVSANKPEYAPTPASVRFSVVRTGTADLDLRAAGNLRMDSLFGVYTAGAS SQATRPGDPYNLPRAVGPNGTVLNDVDGGYEKFVDGGAQSLARAWYPASGGNLTLKVGGD LSGDIMLTRSGSGAGRPNPDDKGFDSSAIGNWLWRQGTGGTFGGAGDQATAWWINFGSYA GGGKGVADKLLGFTGFGTLGGGDLLVDVGGNAGTQTRRGVKLEGFTDNQRSQGIVLAVGG TGRVLADGSLSLTGGGDVQLRVGGALNPLDRPFFQGDGGDVNAALNGVVVNLRGDVQLQA GSIGSLPLTFGTSSFQQSPRETRAFDPYTATRGMAQGGIVLAPGDASYTVSTRGDLVVKG VIDPTRESLPNATPFSANGLSGQGKSWFSLWTPNTAINLLGSGGNLVPVTGSSGIAATDS AYVYPSILSAVAASGSLFYGDAATAIGTGSGTALLLAPSANGRLEFLAGDSIYAGGNTVS QSGAAAAALATPLHPGFTGTASDGTGVGNLSGGNRLRDATRRPLFAFGADTVSGEAVGNA PARFYAVHGDLIGVSSGRVMRFTNDDVMRKGQTWYDGAQPVWMMAGRDIVSSGTPIGQAD VVTGFEEPSFLGTGNLFVHRKPGDISVVSAGRDILFSTFNVAGPGTLEITAGRDIRMENK ASVSSLGSVVPGDSRPGASIAMLAGVGAGGADYAGFAQRYLDPANLMQSGQPLADQPGKV VKNYNGKLRLADWLRAEYGYSGDEQGAAAWMAQRQASLDAEAGKPRRVLANDYRQASQLY LVNWLEASQGYVGNGGAQEALAFFNALPPEQQRSYLRGVYFAELREGGREYNDENGVRYG SYLRGRNTIASLFPGTSYKGDITMFGSAGINTLFGGDIALLTPGGRQVFGIEGAAPKAVG TLIPGVITQGAGDISLYSLGSILLGQSRIMTTFGGGVLGWSAEGDINAGRGSKTTLVYTP PKRVYDRWGNVVLSSDVPSTGAGIATLNPIPEVPAGDIDLIAPLGTIDAGEAGIRVSGNV NLAALHVVNADNVQVQGKSTGLPMVASVNVGALSNASAAASQASAAAQDVLQRERAAQRQ ALPSVFTVRVLGFGDEPAGGAPGGGEVRRKPAEQASYDPSGFIQMVGHGALTDAQIAKLS ENERRGLPRGR