Protein Info for GFF786 in Variovorax sp. SCN45
Annotation: Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (4158 amino acids)
>GFF786 Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system (Variovorax sp. SCN45) MSKQTFRRAPVAHAVAIALAMAGLAGNAQAQRAFSAAWMAQKNVAQGTAAATGYLPNGTP ASLLTNPLAQQQKANEQLQRSIGNLNLAAQAIAAQQAAQAAARQAAMNAGTDVPDGLADG GLKVDTNSLTAGWHNALAPKADNAGGRSTVTVQQTSDKAILNWETFNVGRNTTVEFKQQA DWAVLNRVNDPAARPSRIQGQVKGDGTVLIANRNGIVFSGTSQVDTRNLVAAAAHISDAQ FGANGIYSNGTTPTFSNAQGKVEVQAGARIATRAPTISTDGGGYVLLVGQEVHNAGDIAT PRGQAALAAGDSFLIKKGSGTGGNQASSTRGNEVTPQFNTDSLAGKVTNTGLIVAREGDV TMAGRDVRQNGVAVATTTVNTRGTVHLNALGADGKVTLGPGAATAVVIEDDGKTTALNSQ RDGLRGPALPEPNQDVSAVRDRRDQSRIEIASSGTVDFQSDSLTLATGGQIAVTAAARSL VRDRARIDVSGAVGVNLAMESNNVKVNVQGNEQRDAPLNRDGKSLNNLDVWIDRRSLVLV PKGTNGYASDRWYTAGGLLEVGGYLGTEGHTASEWMAQGGTVSFGGAEVVTQAGSNINLS GGTLNVQTGFIHQTWLKGADGRLYEVSKAPGDQRYEGLYRGFEDEHKRWGDKNTGYFYNP LIGPQKRLENGYTVGRDAGKLVIATGAAVLEGDITSEAFQGARQTQAPQADVDGYNQSHN AASQRGQLVIGDYVPMFDRRTGALNHVLVAALDRVELKETGERIAAALDLGTALPAERKD KLVLDTAQLNGMALGAVRIAAREKIEVNADLRVASGGNITLYGNDVAVQANLTAHGGSMA LGNVLSQVGVSGRVDMLVNAAKPLGNVTLADGVTLDASGLWSNLELDPFAENVAYASGGS VAIRASGDVALQRGSTVDVTSGAVMRMGGKTQGGKGGSVRLATTTRTGSLRLDPEARLHG YGVAGGGTLSLEAAKVLISDQAGGTDAGTLVLGGNFFDKGFSAYEVIGGDGLSVAEGTQV DVTMPVYRFRDEARGVSTASGSAQALELWAQPLYLEDAAKGVLLQRKGASLTLQSGRSLL GEIDPLTGSLLVGRGARIEVDPGQTIALRGAGQITVDATLVAHGGSIDVRQQQFGLVDPA QETPQADGKVHTRSIWIGDNAVLDVSGRARTAVDVHGRSYGDVDAGGSIVIGGVLDHDRA IASSADAYVIVRPGARLDASGAQAALDVPGQGRTNIATDGGRISLSSYLGLYIDGSLRAA AGGAGAAGGSLDIALESPLYRSTGLNRAQQETIVPRELTLVQSQAPLLAQDLAPGQADAA LRYGKTRLSADRLSAGGFDNLALLANGQLSFDGDVSLRMGQSLSLFSSSLSLAESSSANA RVQLAAPYVKLSGTGLYYSAGSGAVRPGIQHGMTPLDSEAAFSVQAGRMLDLGNGISFGT SGNYAEHTEFTPVRVERRGFENVELASDGDIRFLAPNNADARSRLWTRGSLTLAAAQLYP ETGAIAQVNAGYRMDPVVLRPVYDPGSVLRIERRGEAPAGVPYSAFGSLEFAAAVIEQGG VIRAPLGNITLGTDSSQGTKRVALLPGSITSVSGAGLVMPYGGTTDGIAYQYDGRPAALK GADGGAGIRLGAELVDVQAGALLDLSGGGELTGAGFVAGRGGSTDARFHPLMQIGADGRF SLPSLSTNAVYAIVPGVQPLAAPAGGPAGASKAGIGRQITIGAGVPGLPAGTYTLMPSTY ALLPGAFRVELNGAPGSKGAGAQPLAMRNGSWSSSGQLSVAGTGLRDSLSSQVILTPAAV LRTYAQYNETSYADFVRTDAARLGVPRAVLPADAGSLAFVLSRGNDDVSLNFEGLARFQA AQGGRGGTAMVLGVSIEVLGAGQRHTPGFDGASVRSDTLNALGAGRLVVGATPLVVYGQQ GRYVTFSSPASDVVLRAGASLQAPEVFLAGRDLVVEAGAGISTLGRGDAIYDASSGFVYQ PGTTSLLAVSNGRLDVLAPQAPDIGSTGSIRLGVCALPSCDRNSTFYSEGTITAATNGAF ELDEAARYGTRHLALAVSGVNAGTTQSLADAQARGVLAGGLTLTQDLLQRLLNGDTSIGA PALESLTLTVRDAINFYGSVTLDTIDPATGKSRVDSLVLSTPAIYGAGGAGDVATIRTQN LIWSGATQLPGTVIDGGAGTGGGTLDIQAARIELGGAPHTVSNGQDDDARLALGFATVKL GASERLSTNRKGSLSVYQSQGAYEEGKGYAYSGGNLEITTPLVTGDAGSVGRITAGGTLR IGAPEGGRLDADAAKRIQALGADLAFNARSIVLDSAIVLPSGKLAMTAQDDLTLADRALI DVSGRKLSFNDVDKFSWGGDVGLESQAGGIRQAAGATIDLSAQGNRAGTLKAVALGASAG VVDLQGRILGASSGHYDAGGTMVPFKAGGVDIRAQRLGDSGTLSDQFAALNQRLSDGAVF GSRSFQLKQGDLVIGAGLKAGEVNVSVDNGSLAVLGTIDASGERVGSIRLAGRNGLTIGG GALLDAHGTVLRVDSRGKIIDAPNRAMVELDGGDGVLTLAGGARIDLRHGTGAAVGSQPG QHDGQKRGTLELYAARTGETSGDIRIDASGSLAIDGARSIAVNAVWRYDDTDPLAVIKDG LDSVSGRPYREITQAYLDHKHEQSTKFMDAALANGALLHGKLAGLNNATYADALHLRPGV QIVTDKDLVVQGDLDLSGYRYDSLNPRTQKTGVYGSGEAGSLVLRAAGNMDIYGSINDGF APPPLTPEENGWALVPGVQPYNGDLVLPIGGVRLAEGTTFPSGATLNYDLPMQALTLGEA VRLPAAGALAQPYTVPAGTVLSGDVRDASGNLLHARGTLLKEAVVLPTGTQLGAGMALPK GTALAAMRWPKGVPLPVAFENDVARRNVLLAGTLELQRGALIPSTTRVVLESGVGYIELR PDSDGTRGRNWALAPMLAAGSESWSVRLVAGADLGAADTRIALAGAGSLRLADTHYRATV TQGGGTLVWSEFNNWGMPSGQPVTPDEEWLCALLDPNDCVSKSGIAWSPGNGFGFPGGTP VPEEYLPICTFTPENCIDYGSAMKTLAAHGQGMSVVRTGTGDLDLVASGDVDVRSLYGIY TAGTQSAGVAPRYNQARGTAPGATSVLGTGGADYESLVAGDARAYQAWFPEAGGNLLVRA GGDITSDMLTPLNSDVVQKSSVAVGNWLWRQGDGSAQLPTAWWINFGSYAVDPSGTLGAD VKPSLVGFTGFGTLGGGNVQVQAGGNAGMLERKGTARSQGLVVAVGSTGRVADDGSIVLT GGGDIDVRIGGGVNSSQLARGNANGSEKPNHDLQGALVNLRGATQLSAASVGGMILGGRD MKDPRAFDPFTSNRAESTGGLVLMPGDSAMRIDTLGDLVVGGAGDPGRVRLMNSSPFASY GGGGLSWFSLWTGRTAIDLFSAGGSLTPSTQMSEGTSTSIVTGTNVAPTDFRFVYPAILR AVAAGGSIYSGSSANDGDGGTNDSTSRFSLLLAPSRSGQLELLAGDSMYMGNYAINQSGA DPAQMPGPLKPAFVGFNGNQRVADNLGAGGLEVNARTDPFRLFAFVPETYAPGAADAPRT PARFYALNGDIVGLRSGEILQRRDGATWYEAAAPAWVIAGRDIVSAGTGLGQPTSLSLGT GTKNDADSSGNLSVHGHAQDVSRMVAGRDILYSSFNVAGPGTLEITAGRNIVMEDRAAVA SLGPVTPGDKRPGASIAMTAGTGAQGADYAGFLARYLDADRRAESGTPLASQPGKVVKTY EAELFAWLRDADNGLGFTGTASEAQAFFDALPAEQQRVFARQVYFSELKAGGREYNDADG ARYGSYLRGRNAISALFPQADAEGKAISYRGDITMYGSAGVNTLFGGGIQMLTPGGMQLF GVEGNAPVAKAGITPGVITQGKGDISLYSLGSILLGQSRIMTTFGGHILGWSAEGDINAG RGSKTTVVYTPPKREYDQWGNVTLSSNVPSTGAGIATLAPIPEVPAGDIDLIAPLGTIDA GEAGIRVSGNVNLAALQVVNAANIAVKGESVGIPTIAAVNVGALTNASAAASQAAVAAQD VLQRERAATRQSLPSVFTVRVLGFGSEGDGAAAPAEPRAAATRVGYDVNSPVQVLGRGAL PEAQKAKLTARERQLLGQ