Protein Info for GFF781 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 615 transmembrane" amino acids 26 to 54 (29 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details amino acids 211 to 232 (22 residues), see Phobius details amino acids 260 to 280 (21 residues), see Phobius details amino acids 293 to 318 (26 residues), see Phobius details PF00664: ABC_membrane" amino acids 40 to 231 (192 residues), 49.4 bits, see alignment E=8.2e-17 PF00005: ABC_tran" amino acids 396 to 543 (148 residues), 104.2 bits, see alignment E=1.4e-33

Best Hits

KEGG orthology group: None (inferred from 87% identity to vpe:Varpa_3881)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (615 amino acids)

>GFF781 hypothetical protein (Variovorax sp. SCN45)
MQATTTTDTKKSNSPGNAIRELYAALWHFAAGARAQLLGATALLASSQLIRLALPYLAGQ
AINALQRGELNGAGRWIAALAGVYVGAWALHGPGRILERNVGMRVRETLADQLYARIAAA
PLAWHDGHHSGQLQHRVHQASRALSDFAQNQFIWLTNAVNFVGPLVALALLSRTSGVTAL
AGYVLIGLVIVRIDRALMKLARAENDADRRYVAALLDFLGNASTVIGLRLQGASRLLLRR
RMAAISLPLKRTVVLNEGKWFAVDLMGLALTWGLVVVYVWQARAPGQAVMLGAVFMIYQY
AQQAAGVVTSVAANFSFFARMHTDYSSAEPIWQAPSGDVAASVPEQVPEQVPERERIDAT
AVWSRIDVDGLQWRYAARGEQQTEAADPVTVRSSGLHDVKLSLRRGERVALVGPSGGGKS
TLLRVLAGLYPPDSGSLSLDGRPVDWTQLRRLATLIPQETELFEASVRENLAFGQPRDDA
QLLAALHTSTFDEVLKANHGDLDTAVSERGFNLSGGQRQRLCLARGVLAAQGSSLLLLDE
PTSALDAGTEARVLERIAGAFPDACVVASIHRLSLLERFDTVVLMEAGHVVDYGPRDAVL
GRQPLLQRMVAPATR