Protein Info for GFF780 in Xanthobacter sp. DMC5
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 67% identity to bbt:BBta_4872)Predicted SEED Role
"Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)" in subsystem Serine-glyoxylate cycle or Succinate dehydrogenase or TCA Cycle (EC 1.3.99.1)
MetaCyc Pathways
- TCA cycle III (animals) (9/10 steps found)
- aerobic respiration III (alternative oxidase pathway) (3/3 steps found)
- succinate to cytochrome bd oxidase electron transfer (2/2 steps found)
- aerobic respiration I (cytochrome c) (3/4 steps found)
- succinate to cytochrome bo oxidase electron transfer (1/2 steps found)
- aerobic respiration II (cytochrome c) (yeast) (2/4 steps found)
KEGG Metabolic Maps
- Benzoate degradation via CoA ligation
- Biosynthesis of phenylpropanoids
- Butanoate metabolism
- Citrate cycle (TCA cycle)
- Oxidative phosphorylation
- Reductive carboxylate cycle (CO2 fixation)
Isozymes
Compare fitness of predicted isozymes for: 1.3.99.1
Use Curated BLAST to search for 1.3.99.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (541 amino acids)
>GFF780 hypothetical protein (Xanthobacter sp. DMC5) MGFSSFAPSGLHLTCDVLVLGGGPAGTWAAFEAARTGARVVLADKGFCGTSGATAPSGTS IWYVEPDPKLRAAAIVSREALGGFLADRAWSARVLETTHAALHELGARGYPFPLDGAGNP IRVSLQGPEYMRLMRKLAKGAGVRILDHSPALELLVDEAGAVAGARGIRRQQGDGWQVDA GAVVIATGGCAFLSRALGCTALTGDGHLMAAEAGADFSGMEFSNAYAIAADFASVTKTLF FKWATFTDEAGEVIPGAASNGGRSVIARHLQKGRVFARLDRADAAMQANMRAAQPNFFLP FDRMGINPFTDRFPITLHLEGTVRGTGGLRIVDETCATRVPGLYAAGDAATRELICGGFT GGGSHNAAWAVSSGRWAGRAAADFGRRALSGRVRRGAGTAGLRDAGARPFDPAEAARTVV GEVHPFDRNYFRTEEGLTRSLDRLDSQWARLTASAPADGTNVLRAREAAAMTAVARWMYR SALARTESRGMHRRVDHAAADPAQRHLLTAAGLTEVSVAHRPAPPLAADAAEQRAGEGIA A