Protein Info for GFF78 in Sphingobium sp. HT1-2

Annotation: Putative oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 89 to 105 (17 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details PF00106: adh_short" amino acids 10 to 203 (194 residues), 131.1 bits, see alignment E=7.3e-42 PF08659: KR" amino acids 13 to 182 (170 residues), 29.6 bits, see alignment E=1.3e-10 PF13561: adh_short_C2" amino acids 16 to 206 (191 residues), 97 bits, see alignment E=2.7e-31

Best Hits

KEGG orthology group: None (inferred from 88% identity to sjp:SJA_C1-17550)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>GFF78 Putative oxidoreductase (Sphingobium sp. HT1-2)
MSDTLPLFGKLALVTGASRGIGAATAEALAAAGAHVILTARTSGGLEEVEDRIHQAGGSA
TIAPLDLIDGESIGRLAQAISGRWKALDILVLNAATLGSLASVPAIDAKEFARLLMLNIA
APQALIAAFDLMLRASADARVIALTSSVGATPRAYWGAYGASKAALETLVGAYGEEMKNI
SAIRTHIVDPGATRTAMRARAFPGEDPATLKGPETVARAIHDLVLSDAPNGRRLRVEG