Protein Info for GFF772 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details PF09084: NMT1" amino acids 55 to 283 (229 residues), 33.7 bits, see alignment E=1.8e-12

Best Hits

KEGG orthology group: None (inferred from 89% identity to xau:Xaut_3460)

Predicted SEED Role

"similar to ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (367 amino acids)

>GFF772 hypothetical protein (Xanthobacter sp. DMC5)
MPRLSLPTSRTGRALAFSALAASALLATSLSGGSPAARADEPLTAINLQLTPWTVIAQEK
GIFKDEFDRIGVKKVNLIASGGADLVGAESAAVNNGAIAIAQRMIYPATVHRANGLDGVV
IWASEPSNRYRAPILARADNDKINSVADLDGKKFGSSRISCYWSSPFEMTTKAGLPFDSR
DKQGRIRYTSIDNSAVAITSVLTGATDATTAHLAAGAFAGAWLSGKLKVIGRSPDDGIYV
NNAGRVTYFARRDFVNKYPQVVKAFLAARERTREWTYDHVDEAAQIVADKTRVPVEVAKF
QISHAGEWEFMAGEPNADRARNAIKTFQAWYVANGDDILAERSLTEAQIDAFIDGRFFAG
GEYSIYN