Protein Info for PS417_03910 in Pseudomonas simiae WCS417

Annotation: pilus assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 36 to 55 (20 residues), see Phobius details amino acids 62 to 79 (18 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 119 to 143 (25 residues), see Phobius details amino acids 163 to 181 (19 residues), see Phobius details amino acids 188 to 205 (18 residues), see Phobius details amino acids 211 to 228 (18 residues), see Phobius details amino acids 234 to 254 (21 residues), see Phobius details amino acids 324 to 346 (23 residues), see Phobius details amino acids 358 to 380 (23 residues), see Phobius details amino acids 387 to 404 (18 residues), see Phobius details amino acids 414 to 433 (20 residues), see Phobius details PF04932: Wzy_C" amino acids 200 to 331 (132 residues), 54 bits, see alignment E=8.7e-19

Best Hits

KEGG orthology group: None (inferred from 85% identity to pfs:PFLU0794)

Predicted SEED Role

"Pilin glycosylation enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TUS3 at UniProt or InterPro

Protein Sequence (466 amino acids)

>PS417_03910 pilus assembly protein (Pseudomonas simiae WCS417)
MGLFVEQRGSVFLVAVMCLLFVGICAPFSGHDLQRVMQIGIGACAVLYGLSVARVERLVD
RPTALGLALIIGLGLMSSMRAHQPLWAFAEVAVFVGCGAIAVAFALLRRQGGEPLDRALI
LFVVLLCLIKSIQYTYAGALAFISAERVLDPDALLSGFSNKRFYGQFQTFTLPLLALPLL
IPTLSRPLKAATFTLLCVWWLIAVGGGTRGTWLGMGVAAVVLAVLGPWGRRWLGWQLAAL
LGGLLLYWLVFKVLADHLGIEIANAASDRLTTSLSGRGPIWWQAWHMLVERPWLGFGPMH
FADIPNSIAAHPHQAILQWTSEWGVPSALCVAVLAWRGGWATFGVLRKRALSAERADLLR
LCLFAALVGALVQSMVDGVIVMPNSQVWLALVVGWLMALHVWRAPAAVERSWAWGAWKAL
SVLAVGLLIFIALRDVPHFKQAQQQYLDAHGDYLQPRFWAQGVIAR