Protein Info for GFF7671 in Variovorax sp. SCN45

Annotation: Uncharacterized protein YjgR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 209 PF00753: Lactamase_B" amino acids 2 to 60 (59 residues), 25.2 bits, see alignment E=1.4e-09 PF05872: HerA_C" amino acids 42 to 208 (167 residues), 253.9 bits, see alignment E=2.9e-79

Best Hits

Predicted SEED Role

"ATPase component BioM of energizing module of biotin ECF transporter" in subsystem Biotin biosynthesis or ECF class transporters

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (209 amino acids)

>GFF7671 Uncharacterized protein YjgR (Variovorax sp. SCN45)
WLILTHVHLDQAGGAGALMRRLPNARLAVHPRGAPHMIDPSRLVAGATGTGKTVTLMTLA
EGFSRQGVPVFLADVKGDVAGLAVAGAANDELQERLKEIGVADWTPQANPVVFWDLFGKL
GHPVRTTVSEMGPTLLARILELNDTQSGVLDIVFKLADDRGLLLLDLEDLRALLGLVADE
RKDISTSYGLVSAQSIGAIQRSLLRLEQD