Protein Info for GFF761 in Variovorax sp. SCN45

Annotation: FIG00537905: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 771 transmembrane" amino acids 618 to 641 (24 residues), see Phobius details amino acids 647 to 669 (23 residues), see Phobius details amino acids 724 to 743 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 83% identity to vpe:Varpa_3892)

Predicted SEED Role

"FIG00537905: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (771 amino acids)

>GFF761 FIG00537905: hypothetical protein (Variovorax sp. SCN45)
MSASDDMAVRPVSSNASRAVPYGVAMPNRPSSPSSDASASSQTPHRWQFIRTGGADQVIF
RTGEDIARIAELDQKLWVALACPTRGIDFDTRTLDLIDTDRDGRVRPPEVVAACEWVCAR
LRNPDVLLQGSDVLTLGDLDDSNPAGARLLEEARRLLQIQGKPDAQTLTLADIADRGELL
AAMRFNGDGVVTPDTAQDDAVRATISEVMRLHGSVPDRHKETPGVDRARVEAFFAEVQTA
RDWHAQADAGNAELMPLGEPTLAAADAALKVQAKLDDFFARCRVAAFDAQAVTALNPSAK
AYDALGANSLDLHAEPIAELPLAPVTPRCVLPLSGTALNPAWADAVAAFAERSVAPLLGA
REELAEEEWLAIRRKLAPLQALMARRPDNWAAALPLDKLDALLETREALLALIHDDEAAE
EHNTLLVDLEKLIRLQRDLVVLLDNFVSFKAFYRREGAIFQAGTLFLDGRSCELTVQVQD
TAKHAVLAGLAKTCLAYCDCTRQGAKMSIAAAFTAGDIDFLFVGRNGVFYDRQGRDWDAT
ITKLIENPTSVAQAFFAPYKKFVRVIEEQVAKRAAAQDAAGQGSLTSFATKLTTADQAAD
AAKAPAAAPRPTGRVDVGTVAAIGVALGSISAVLVAIFGKFVDLGQWIPVALLGIVLAIS
GPSMLIAWLKLRQRSLGPILDASGWAINGRMKVNVRLGGMLSQTARVPPGARRIVRDPYR
DRHGATGVAALAVLVLAVTLLAWRMNWLDDRLPAALQHSPTAQAAARPGAA