Protein Info for GFF760 in Xanthobacter sp. DMC5

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 32 to 50 (19 residues), see Phobius details amino acids 57 to 79 (23 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 217 to 245 (29 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 5 to 271 (267 residues), 143.3 bits, see alignment E=4.1e-46

Best Hits

KEGG orthology group: None (inferred from 42% identity to cya:CYA_2479)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (286 amino acids)

>GFF760 High-affinity branched-chain amino acid transport system permease protein LivH (Xanthobacter sp. DMC5)
MGQLIFNGLVTGLLIALPALSLALVFSVLRFANYAIGAMLTVGAYLVYGFNAGLGLPLPI
AALAGSLAAAGLALVINRLVYDRLRDRGGVTLLVASIGVGIALENAVRFIAGSSTRGFQV
DVARPVRLWGLRINHEQIVTIITVLVALTLVWVIFRYTRLGRAMRAVADNADLAAVRGVP
RGQVVTVVWVLSAVLATLAGVLVGLDGNVDPQMGWNYVLPVFTAAILGGIGNPMAAVAGA
VLLGITEELATLVLAPHYRTMVAFAVMALILLFRPTGLFGVPGGAK