Protein Info for GFF7430 in Variovorax sp. SCN45

Annotation: Integrase/recombinase, RitA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 transmembrane" amino acids 105 to 121 (17 residues), see Phobius details PF00589: Phage_integrase" amino acids 40 to 211 (172 residues), 90 bits, see alignment E=8.1e-30

Best Hits

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (227 amino acids)

>GFF7430 Integrase/recombinase, RitA (Variovorax sp. SCN45)
MCWSLRAFLRYLHHTGLNPHALAGCVPSIRRWNLVGLPTYLSAAQVQKVLDGCDQASAVG
RRDFAILMMLSKIGLRADEVATLTLDDIDWRAGDMLVRAKGRQRARMPIALDVGAAIVAY
LQEGRPKSSCRQLFLRSLAPHTGFASASAITMIAKTALERAGIQGYAHQGAHIFRHSLAT
ELLRAGATLSEIGHLLRHKSHDTTRIYAKVDIEALRTLSLPWPGGAQ