Protein Info for GFF7404 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 209 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 42 to 63 (22 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 128 to 147 (20 residues), see Phobius details amino acids 159 to 176 (18 residues), see Phobius details PF01569: PAP2" amino acids 74 to 150 (77 residues), 45.2 bits, see alignment E=3.9e-16

Best Hits

KEGG orthology group: None (inferred from 56% identity to vap:Vapar_1188)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (209 amino acids)

>GFF7404 hypothetical protein (Variovorax sp. SCN45)
MHSFWQAFTSLGDSGFLLPAGLLIALWLFLDKGSGTAALRWVLMFGTCGLIVMLSKIAFM
GWGIGSAKLNFTGFSGHTALATSVWPVLSWMAMPQVAQRRRLIAALLGWCVAISIGISRL
ALEVHSNSEVIAGAALGTTVSAGFLWWHSRPISPLRGRRWSLVAAVILLAVVSQGDPAPT
QGALEVMAAKLANRERPYTRNEMLATFPG