Protein Info for GFF735 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 transmembrane" amino acids 34 to 56 (23 residues), see Phobius details amino acids 69 to 94 (26 residues), see Phobius details amino acids 116 to 142 (27 residues), see Phobius details amino acids 152 to 175 (24 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 213 to 239 (27 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details amino acids 279 to 290 (12 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details amino acids 397 to 424 (28 residues), see Phobius details amino acids 447 to 464 (18 residues), see Phobius details PF11862: DUF3382" amino acids 35 to 132 (98 residues), 52.9 bits, see alignment E=3.7e-18 PF02653: BPD_transp_2" amino acids 154 to 462 (309 residues), 160.3 bits, see alignment E=5.3e-51

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 82% identity to xau:Xaut_3901)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (495 amino acids)

>GFF735 hypothetical protein (Xanthobacter sp. DMC5)
MAPVSGSDLADVPDPSPVLAEKPRGPERTSAVAGALKDALVSGLLTALLFLPLVGFRASE
SSTGSLVLTYRFGLVAIFAGIVMVGRFLLMVTVWNPNRPPRRVSTTPGVMVRLGALASPA
VKPVFFSFAILYPFLSILLAGGLSPSRYWVDLGIYVLTYVMLGWGLNIVVGLAGLLDLGY
VAFYAVGAYTFALLSTSVPINDFFAGTLGDDFWTAWAFWICLPLSGILAAMWGVILGFPV
LRLRGDYLAIVTLAFGEIIRLVLINWVSLTNGGAGISSIPPITFFGVPFDSSETGFASIF
GLEFNSMHRMFFLYFVILGLAALTAVVTIRLRKMPVGRAWEALREDEIACRSLGINTTLT
KLTAFATGAMFGGFAGAFFAVRIRFVSPESFTFMESAVILAIVVLGGMGSQMGVAGAAIL
LIGGMELLRNLSFLKADFLFGSDFDPSLYRMLIFGFAMVAVMVWRPRGLVSSRMPTIFLK
ERKAVSGSLVKEGHG