Protein Info for GFF7229 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 45 to 76 (32 residues), see Phobius details amino acids 96 to 124 (29 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 201 to 222 (22 residues), see Phobius details amino acids 233 to 253 (21 residues), see Phobius details amino acids 264 to 287 (24 residues), see Phobius details amino acids 309 to 326 (18 residues), see Phobius details amino acids 337 to 358 (22 residues), see Phobius details amino acids 368 to 388 (21 residues), see Phobius details amino acids 395 to 417 (23 residues), see Phobius details PF02308: MgtC" amino acids 13 to 131 (119 residues), 59 bits, see alignment E=6.2e-20 PF13194: DUF4010" amino acids 181 to 390 (210 residues), 120.3 bits, see alignment E=9.8e-39

Best Hits

KEGG orthology group: None (inferred from 68% identity to mpt:Mpe_A3492)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>GFF7229 no description (Variovorax sp. SCN45)
MNLPSPSAVIVGLAVALGIGLVIGTERERRKGDGDRRAAAGLRTFAIVALTGAIAQALPA
AALVPIGGTLVAALAAVSHWKSRSPDPGMTTEIALFATYLIGVLCVVEPGLGAACGMGLA
LLLAARRRLHRFATQLLSEQELHDGVLLAALALIALPLIPSQPVEMLGGIAPRPLASMVL
LIMAMQAAGQAAARWLGVRGGLLGAGFVSGFVSSTATVASFGNRAREQPLHTGLLAGAAS
MSAVATWVLALAMTSALSPQAGAALLPVALAGAAGAVAVGLLPLLAASRDAVAVEPPAAQ
RSALRPREALAVALALALVALLVGSAQRHFGNAGLQAGIALAALVDAHAPVASLASLHAA
GTLQTDSFIRGVLVAIGTNTLTRCAVALGAGGRAYALRVGAALMASLGCACIAAIWLPA