Protein Info for GFF7209 in Variovorax sp. SCN45

Annotation: ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF09084: NMT1" amino acids 64 to 264 (201 residues), 89.6 bits, see alignment E=2.8e-29 PF13379: NMT1_2" amino acids 67 to 264 (198 residues), 38.3 bits, see alignment E=1.3e-13

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 53% identity to gym:GYMC10_5033)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>GFF7209 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) (Variovorax sp. SCN45)
MNSTASFAPARRTRWARLAAFGVAAAILAACSRTEPVPAPAPAAEAAQKVRYAGYPGVTG
LGVQLGIEKGFFKDEGLALEFINTQDAVSGLASGDIDIADWNTTGAIVAAGKGVPLTIVA
SMFRHVGPFYLVGAPDVASVSALKGKTVGAAAFGTGLDVYARTILSKEGVPLDSVSFVAN
GVNAAALATVENGSVSATIIHEPFASLAEASGKGKVLAAGYDYLPRFHTGVIVANNKFIA
SSPRLLEKFLRAYFRSNEYAKAHLDEYKAFYAKRLSVDPKVVDAAVRRELPIWANDPKVS
LDEVQETQQVQLALGFQKEIYDAAKFVNLAFVPKGAASPAP