Protein Info for GFF7135 in Variovorax sp. SCN45

Annotation: FIG00977464: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 112 to 135 (24 residues), see Phobius details amino acids 143 to 167 (25 residues), see Phobius details amino acids 174 to 197 (24 residues), see Phobius details amino acids 218 to 242 (25 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 287 to 305 (19 residues), see Phobius details amino acids 311 to 330 (20 residues), see Phobius details amino acids 349 to 370 (22 residues), see Phobius details amino acids 377 to 397 (21 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 342 (320 residues), 137.3 bits, see alignment E=6.2e-44 PF00083: Sugar_tr" amino acids 51 to 184 (134 residues), 28.1 bits, see alignment E=1e-10

Best Hits

KEGG orthology group: None (inferred from 85% identity to vpe:Varpa_5936)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>GFF7135 FIG00977464: hypothetical protein (Variovorax sp. SCN45)
MQTNLAAAPLPEPERLPLSLGWLALGAFAIGTESFMVAGLLPVLAADLQVSATRAGQLVL
LFALSYAVGSPLMAALFARFGRRPLLVASLAAFSALALAASMAHGFAQLALARVALGLAA
GVFLPTASAVAAAMVSPALRGRALAIVSGGGTVAVALGVPLGAWIASWGGWRTAYMLIAA
VAALATWGLALGLPRGLAQAPVAGKQAPAFEAAREPGVLPALLVTLLWATGGFSFYTYIA
LFLSGTVGFGADGASAVFCAIGVAAALGTAAGGWATDRFGAHRTAQGFALMLVLIMGGLS
FSAQMLPRGLALPLIVGLSALWGFAGWGFGPAQAVRLIRLAPERAPMTLSLNASATYLGI
AAGSALGGAAIELFGVSAVGWTGAAMQLVGLVLLLRAARKARVACNGRASLCF