Protein Info for GFF7128 in Variovorax sp. SCN45

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 PF00239: Resolvase" amino acids 1 to 101 (101 residues), 119 bits, see alignment E=2.8e-38 PF02796: HTH_7" amino acids 104 to 147 (44 residues), 37.5 bits, see alignment E=3.2e-13 PF13384: HTH_23" amino acids 119 to 145 (27 residues), 27.8 bits, see alignment 2.5e-10

Best Hits

Swiss-Prot: 57% identical to PINE_ECOLI: Serine recombinase PinE (pinE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 93% identity to pna:Pnap_4123)

MetaCyc: 57% identical to e14 prophage; site-specific DNA recombinase (Escherichia coli K-12 substr. MG1655)
5.99.1.-

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (151 amino acids)

>GFF7128 Mobile element protein (Variovorax sp. SCN45)
MSGSRAERPGLARALEMLREGDTLVVWKLDRLGRSVKNLVELVGQLHQQGVQFKSLTDAI
DTGTPSGRFFFHVMASLAEMERELTAERTRAGLEVARQLGRKGGRKRKMTDSKIESARKL
LANGVPPRDVAKNLGVSVPTLYRWIPASSQA