Protein Info for PS417_03595 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 574 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF04733: Coatomer_E" amino acids 96 to 328 (233 residues), 21.2 bits, see alignment E=1.5e-07 PF13432: TPR_16" amino acids 223 to 286 (64 residues), 19.1 bits, see alignment E=1.3e-06 amino acids 263 to 313 (51 residues), 17.7 bits, see alignment 3.7e-06 amino acids 298 to 346 (49 residues), 20.1 bits, see alignment 6.4e-07 amino acids 358 to 396 (39 residues), 18.4 bits, see alignment 2.2e-06 amino acids 473 to 525 (53 residues), 22.3 bits, see alignment 1.3e-07 PF14559: TPR_19" amino acids 235 to 293 (59 residues), 39 bits, see alignment 7.3e-13 amino acids 473 to 529 (57 residues), 33 bits, see alignment 5.5e-11 amino acids 506 to 559 (54 residues), 25.4 bits, see alignment 1.3e-08 PF13174: TPR_6" amino acids 259 to 285 (27 residues), 12.2 bits, see alignment (E = 0.00021) amino acids 498 to 524 (27 residues), 16 bits, see alignment (E = 1.3e-05) amino acids 531 to 558 (28 residues), 12.6 bits, see alignment (E = 0.00016) PF07719: TPR_2" amino acids 493 to 524 (32 residues), 23.8 bits, see alignment (E = 2.7e-08) PF13374: TPR_10" amino acids 495 to 521 (27 residues), 20.9 bits, see alignment (E = 2.5e-07) PF13181: TPR_8" amino acids 497 to 524 (28 residues), 13.2 bits, see alignment (E = 7.5e-05)

Best Hits

Swiss-Prot: 69% identical to Y4667_PSEAE: TPR repeat-containing protein PA4667 (PA4667) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU0735)

Predicted SEED Role

"FIG140336: TPR domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZE9 at UniProt or InterPro

Protein Sequence (574 amino acids)

>PS417_03595 hypothetical protein (Pseudomonas simiae WCS417)
MNRSSALLLAFVFLSGCQAMAPVSPDGTPPVEDSTPAPEKPKVYSSFSEETVFSLLSAEL
AGQRNRFDIALDNYVTQAINTQDPGISERAFRIAEYLGADQAALDTSLIWAKNAPDDLEA
QRAAAVQLARAGRYDDSMIYMEKVLQGKGDTHFDFLALSAADTDQDTRDGLMKSFDRLLQ
KHPKNSQLIFGKALLLQQDDEADAALKLLEQNPPEEGEIAPILLRARLLQNLNRGKEAIP
LLEKSIKKYPEDKRLRLTYARMLVEQDRMEDAKVQFASLVQQYPDDDELRYSLALVCLEA
KAWDEAKGYLEELIQRESHVDSAHLNLGRIAEERNDPQAALLEYAQVGPGNDYLPAQLRQ
ADILMSNGRTDEAEKRLAAARDAEPDYAIQLYLIQAETLSANNQSERAWKLLQQALLQFP
DDLNLLYTRAMQAEKRNDLAQMEKDLRLIIKRDPDNAMALNALGYTLSDRTTRYAEAKVL
IEQAHKLNPEDPAVLDSLGWVNYRLGNLDEAERLLRQALERFPDQEVAAHLGEVLWANGK
QREARQIWEKFLKEQPESPILRGTIKRLTGSETL