Protein Info for GFF706 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 transmembrane" amino acids 76 to 99 (24 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 135 to 155 (21 residues), see Phobius details amino acids 178 to 208 (31 residues), see Phobius details amino acids 263 to 288 (26 residues), see Phobius details PF11067: DUF2868" amino acids 164 to 445 (282 residues), 206.8 bits, see alignment E=3.2e-65

Best Hits

KEGG orthology group: None (inferred from 81% identity to vpe:Varpa_2427)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (470 amino acids)

>GFF706 hypothetical protein (Variovorax sp. SCN45)
LTNTAPREPAISDAVITEAIRWVEQSGPLDDAQAMRAALASRTTGITDAHTQIIERARQL
GERIGLQPEISRARQWAPWVLIALVALIVMAGLGLAGNVVGGGERHINVVVALVSLLGLH
ALTLLLWLLGLCFPLGSFGTASLGWMWLSLTARVAGGKHGQAPVLLRAATGLLTRARLLP
WAFGLVSHGIWSLSFIVVLGSMLFALAFRSYTLSWETTILDPAFFVRAVQSLGWAPAQLG
FPVPDAATVLAAAPGAAGQRTWALWLTGCIAVYGLLPRLVLVLLSAAVWKRRRKALQPDW
HEPYYRKLLARFAALAPAAIVDADPGRSRTGAPAGLPASQQHDGLFVIGFELPPDMPWPP
AGLPLDAATRVERIDGSAPARRTLLDQLASAHPRTVLLACHAASSPDRGTERFLREVLAH
CGECRLWLAGAPDATAIQRWLDWLRDSGLESVFASDTLTLALRPNEAVAQ