Protein Info for GFF6996 in Variovorax sp. SCN45

Annotation: Flagellar hook-basal body complex protein FliE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 121 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR00205: flagellar hook-basal body complex protein FliE" amino acids 26 to 120 (95 residues), 50.1 bits, see alignment E=1.6e-17 PF02049: FliE" amino acids 38 to 121 (84 residues), 78.2 bits, see alignment E=2.2e-26

Best Hits

KEGG orthology group: K02408, flagellar hook-basal body complex protein FliE (inferred from 65% identity to vap:Vapar_2270)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (121 amino acids)

>GFF6996 Flagellar hook-basal body complex protein FliE (Variovorax sp. SCN45)
MTAFLPVEALSSLSQQAQAMVSATNAQTSQGVSPAGNDAATSLSSSLTNDGFAQMVSQGL
SKVNGQLIGSQVDLQKLAMGDAQNLHQIMINLEESRLSFQLMMQVRSRLLEAYQDVMKMP
V