Protein Info for PS417_03555 in Pseudomonas simiae WCS417

Annotation: ATPase AAA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 PF14532: Sigma54_activ_2" amino acids 21 to 181 (161 residues), 59.2 bits, see alignment E=1.6e-19 PF00158: Sigma54_activat" amino acids 23 to 177 (155 residues), 203.9 bits, see alignment E=4.2e-64 PF00493: MCM" amino acids 29 to 132 (104 residues), 24.1 bits, see alignment E=5.3e-09 PF07728: AAA_5" amino acids 34 to 153 (120 residues), 33.6 bits, see alignment E=1.1e-11 PF02954: HTH_8" amino acids 265 to 301 (37 residues), 23.6 bits, see alignment 1e-08

Best Hits

Swiss-Prot: 54% identical to HRPS_PSESY: Pathogenicity locus probable regulatory protein HrpS (hrpS) from Pseudomonas syringae pv. syringae

KEGG orthology group: None (inferred from 55% identity to psb:Psyr_1191)

Predicted SEED Role

"Formate hydrogenlyase transcriptional activator" in subsystem Formate hydrogenase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TVZ2 at UniProt or InterPro

Protein Sequence (308 amino acids)

>PS417_03555 ATPase AAA (Pseudomonas simiae WCS417)
MSTLNQNSLIEDITFSDCPSIETTINNTAALDIDILLLGETGTGKDTLAQHIHYLSQRKG
NFVAVNCAAIPESLAESQLFGVNSGAYTGAMQSRAGFVEAAHLGTLYLDEIDSMPLTLQA
KLLRVLESRGVERLGSTRFIPVDMRVIASAQRVLHEMVEQGTFRRDLYFRLNVVSIHLPA
LRDRRARIIPMFLHMIQQEADHFKLAYPPPPDSQLLQQLLCHPWKGNVRELRSTAKRFVL
GLPPLSATVITRQEIEMGLKARMHQMEKSLIEECLRQNSHCVGSAATELGVPKRTLYHRI
KHLGVSLG