Protein Info for GFF6980 in Variovorax sp. SCN45

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 PF05598: DUF772" amino acids 50 to 123 (74 residues), 73 bits, see alignment E=3.3e-24 PF01609: DDE_Tnp_1" amino acids 135 to 306 (172 residues), 106 bits, see alignment E=4.5e-34 PF13359: DDE_Tnp_4" amino acids 164 to 305 (142 residues), 30.7 bits, see alignment E=4.7e-11

Best Hits

Swiss-Prot: 59% identical to INSH6_ECOLI: Transposase InsH for insertion sequence element IS5H (insH6) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 65% identity to adk:Alide2_1557)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (325 amino acids)

>GFF6980 Mobile element protein (Variovorax sp. SCN45)
MSQISFADAEQAGKRKKTRREVFLGEMELVVPWKVLLKVIEPHYPVAGRGRRPYSLQAML
RVHLMQNWFALSDPAMEEALYEIASLRTFAGLGLEAIPDETTILNFRHLLEANDLAEDIF
NQVNAHLARKGLLLKRGSIVDATIIAAPSSTKNSTGERDPEMHQTKKGNQWHFGMKAHIG
VDADSGLVHTVTTTAANEADVEQVSDLLHGKEDAVWADSGYRGAQSRVKRNVQWHIAGRP
SDIAKVTQSRAKARARKQEYQKASIRAKVEHPFRVIKRQFGLAKVRFKGLAKNTAHVITL
FALSNLWMARRKLIAMAGQVRPQVA