Protein Info for GFF6898 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 876 TIGR03939: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA" amino acids 61 to 873 (813 residues), 450.9 bits, see alignment E=8.7e-139 PF21197: PgaA_barrel" amino acids 591 to 872 (282 residues), 144.3 bits, see alignment E=4.7e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (876 amino acids)

>GFF6898 hypothetical protein (Variovorax sp. SCN45)
VFIQKKTGGTVLGGRPSALACALSRHLEHASRGFPPIVCALALGASSAAFANPPVAAVEP
ASNPSAAYDAQQHDALIVARRANRIGAAQALQQLKGWLAAPLGDAERRRVVSDAVAIAAA
DSQFAEAVAIARQVPLAALNDYALGPLALAARRTHDLALQGEVIALWRARQPDAREPRIH
EAFWRLDSGDIAGAKAVYDTLARQPTRQVEDRVALLELRGAVARAEKQPLQALAAYTEAG
ALRPDRRDLRRETDFLLADSGAASTAFDDAETAERAHPGSFSPLALSTLQQQALAQRLHW
AIQERDQRLGAARVTALDRVLSDQEAALARLDASAAQATPEDADAWRQLRVRLLSDRLLA
LVERGRPADAIALYESLRAAGVDLPFWGLGAAARAFAQERRSIDAVPLYEAAVAKGGADL
PMPDDIYFGLVYAYLDTGRFEDAEALLKRLEEATPALMRLTPEAGRPNGQYTDVSGMRGL
LQLYTDRATLAQQSFSTLTGNAPLNAGYAYGAGQTERLREHPEAAVARFEAQAADQPYDI
SARAGHVEALLDAGEFRQARERAESLAADVPEAAEVRDVERKRRAATGPRLDVDAEASSG
GAAIANREWRIDSRLSSGLIDDQWRVFYDQTLGRGTTDIGNANWARGGLGLSWQQGRWMA
EGVLQHANSGPYRNSVAGRVDYRAGDAWRFSATYDGDSKELPWKARVAGIGAHETGASVG
YVVNESRRFDLQWQRLDFSDGNLHNGLELGWRERWVSTPRFQLETRLGAGTSRGRDIDTP
YFNPSSDSTAQLAVRAQWLNWKRDDRQFFQAVELTGGNYRQAGFGSGPLWSLRYEHRWDL
GPRFTLRYGLSISSHPYDGVRERQRGVFLNLSMPLQ