Protein Info for GFF688 in Variovorax sp. SCN45

Annotation: Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 PF01989: AcnX_swivel_put" amino acids 34 to 111 (78 residues), 86.2 bits, see alignment E=5.4e-29

Best Hits

Swiss-Prot: 42% identical to Y1524_METMA: UPF0107 protein MM_1524 (MM_1524) from Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)

KEGG orthology group: K09128, hypothetical protein (inferred from 94% identity to vap:Vapar_3212)

Predicted SEED Role

"Uncharacterized conserved protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (150 amino acids)

>GFF688 Uncharacterized conserved protein (Variovorax sp. SCN45)
MSTEVMTERTIVIRGRKVVGGVAEGEALVTRDRISGWGGIDPRTGTVIETRHELRGQSFA
GKVLVFPGAKGSSGWSAMFHMTRLMNSAPAAFLFNEMTTKMALGAVVTHAPSMTDFERDP
LECIETGDWVRVDADRGVIEITKKKAGGAA