Protein Info for GFF687 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details PF07077: DUF1345" amino acids 42 to 212 (171 residues), 180.8 bits, see alignment E=1e-57

Best Hits

KEGG orthology group: None (inferred from 56% identity to swi:Swit_2123)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (219 amino acids)

>GFF687 hypothetical protein (Xanthobacter sp. DMC5)
MPLLPSESTRRSIGNVVAPARFIAFAVLLVLVGGGSIWFVGWRLGFMIGFDVASATFLLS
CYGLLDDAPSDMRANAKRNDANRPALLALTFVMGLLILTIVASELMEKGSAGPWTIALIV
VTLVLAWIFSNTVYTIHYAHLYYTNSKDETDAGGLAFPETPEPKYWDFIYFSFCLGMTFQ
TSDVEVTSTHIRRAVTFHCLAAFIFNIGILAFSINSLGG