Protein Info for GFF6863 in Variovorax sp. SCN45

Annotation: DipZ protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 588 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 40 to 65 (26 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 116 to 144 (29 residues), see Phobius details amino acids 156 to 178 (23 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details PF08534: Redoxin" amino acids 289 to 398 (110 residues), 45.1 bits, see alignment E=1.9e-15 PF00578: AhpC-TSA" amino acids 289 to 392 (104 residues), 46.5 bits, see alignment E=6.7e-16 PF13905: Thioredoxin_8" amino acids 295 to 390 (96 residues), 31 bits, see alignment E=5.2e-11 PF17991: Thioredoxin_10" amino acids 442 to 588 (147 residues), 168.8 bits, see alignment E=2.2e-53

Best Hits

KEGG orthology group: None (inferred from 74% identity to vap:Vapar_4426)

Predicted SEED Role

"DipZ protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (588 amino acids)

>GFF6863 DipZ protein (Variovorax sp. SCN45)
MLLLIVAYLGGVLTILSPCILPVLPFVFASAGRPFRSHGLPLLLGMALAFAAVATLAAVG
GGWVVAANQYGRYAAIAMLALFGLALLVPSLAQRMSRPLVALGLRLASPGGSQSSVFAPL
LLGVGTGLLWAPCAGPILGLILTGAALNGASIGTSLLLLAYAVGACTSLAAALLFGGRLF
AMLKGSLRTGEWVRRGAGVAVLAGVGAIASGLDTGLLSQLSFGTTSALEKALVEKVGTNM
PSAPRASFDRSGLMLASTAAPRPALALRDEGAIAPLAGATEWINSPPLTAESLRGKVVLV
DFWTYSCINCLRTLPYVRAWADKYKDAGLVVLGVHAPEFAFEKLPANVRKATKDLGIGFP
VAVDSNYAIWRAFGNQYWPALYFVDAQGRIRHHQFGEGGYEKSEQVIQQLLAEAGRGAAA
GPLVSPEGQGTQAAAGASPALSGETYLGYERASNFASPGGIASDRARVYQAPSSLRENRW
ALSGEWTVGAERAVLGKAQGRIAYRFHARDLHLVLGPSADGTPVRFRVRIDGKPPLADHG
TDTDAQGDGTIDTQRLYQLVRQSANGADRLFEIEFLDAGAQAYVFTFG