Protein Info for GFF686 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 TIGR03032: TIGR03032 family protein" amino acids 22 to 343 (322 residues), 409.6 bits, see alignment E=4.5e-127 PF16261: DUF4915" amino acids 27 to 342 (316 residues), 413.9 bits, see alignment E=2.2e-128

Best Hits

KEGG orthology group: None (inferred from 53% identity to pla:Plav_1510)

Predicted SEED Role

"FIG01154384: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (364 amino acids)

>GFF686 hypothetical protein (Xanthobacter sp. DMC5)
MGQAREAAPVEAAAIGVDQTQITCSRTFAAWLAQHRVGLAFSSYQSGQLFLVGQFGNDNL
SFHQRNFVRAMGLAPRGEELYLASLNQIWRFANVLGPDERANGHFDRLYVPRTAHVTGDV
DAHEIAVEASGRIVFVNTKFSCLATVSRTHSFKPVWKPKFISRLAAEDRCHLNGLALEDG
RVRYVTAVSATDVVDGWREHRVGGGLLIRVDDHEVVAGGFSMPHSPRVHDGWIWMLDSAR
GYLVRVDPVTGAKQDVAFCPGFLRGLSIHAGHAVVTLSLPRNLSFSGLPLEDEIARRGGT
PWCGVQIIKLATGDVVEWIRLEGAIRELFDVAVLPGTTCPMAAPESGADLATLLTIEAPD
APLG