Protein Info for GFF6765 in Variovorax sp. SCN45

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 112 to 134 (23 residues), see Phobius details amino acids 145 to 167 (23 residues), see Phobius details amino acids 174 to 195 (22 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details amino acids 278 to 301 (24 residues), see Phobius details amino acids 310 to 326 (17 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 366 to 388 (23 residues), see Phobius details amino acids 400 to 419 (20 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 384 (359 residues), 126.3 bits, see alignment E=6.9e-41

Best Hits

KEGG orthology group: None (inferred from 95% identity to vpe:Varpa_4269)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (437 amino acids)

>GFF6765 Uncharacterized MFS-type transporter (Variovorax sp. SCN45)
MFANQVSAWLQRRGIHYGWIVAAITFLTMLTMSAALGLPGAMLKPLGQEFGWSTEQISSA
LALRFALFGLMGPFAAVLMERYGLRAVICTGLALVGLGMALVTMASQLWQLFVLWSLMLG
LGTGMTALVLGAVVANRWFVARRGLVIGMLTASSATGQLAFLPFAAWMIEHWGWRSAIVP
IVIGSILIGLLALCLMRNRPSDIGLLPYGEKPGTQPATPAAAVPAMNFATPFRVLKEVST
NRTFWILAGTFFICGLSTNGLVQTHFISLCGDNGMGAVPAASVLAMMGAFDFVGTILSGW
LSDRYDNRKLLFWYYGLRGLSLFWLPHSEFTIYGLGIFAMFYGLDWIATVPPTVKLAGAA
FGPAKVGLVFGWVFAAHQLGAATAAYGAGFARTLLLTYTPALYAAGAACLVAALIVMMIR
RPASKTGTPVASAAARA