Protein Info for GFF6750 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 transmembrane" amino acids 6 to 21 (16 residues), see Phobius details amino acids 32 to 53 (22 residues), see Phobius details amino acids 60 to 83 (24 residues), see Phobius details amino acids 116 to 133 (18 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details signal peptide" amino acids 22 to 23 (2 residues), see Phobius details PF04191: PEMT" amino acids 102 to 161 (60 residues), 33.5 bits, see alignment E=4.8e-12 PF04140: ICMT" amino acids 104 to 162 (59 residues), 26.5 bits, see alignment E=6.9e-10

Best Hits

KEGG orthology group: None (inferred from 85% identity to vpe:Varpa_1317)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (186 amino acids)

>GFF6750 hypothetical protein (Variovorax sp. SCN45)
MLFWFQIFAFVAGTAALLYVSRGPLSRPGSHGFYRFFAWECMLVLALVNLPWWHDDPFSA
KQIISSTFFVLSIWLPIHAVRLLKAKGKPSEVRGDDPALYGFEKTSAIVSTGAFRYIRHP
MYTALLLLAWGAFLKQFTWLTLALVLAATVLLVLTALRDEQECIAHFGDAYRDYMRGTRR
FIPFVL