Protein Info for GFF6748 in Variovorax sp. SCN45

Annotation: Undecaprenyl-diphosphatase BcrC (EC 3.6.1.27), conveys bacitracin resistance

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 transmembrane" amino acids 20 to 46 (27 residues), see Phobius details amino acids 53 to 77 (25 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 149 to 173 (25 residues), see Phobius details PF14378: PAP2_3" amino acids 5 to 160 (156 residues), 28 bits, see alignment E=1.8e-10 PF01569: PAP2" amino acids 56 to 167 (112 residues), 63.6 bits, see alignment E=1.7e-21

Best Hits

KEGG orthology group: None (inferred from 67% identity to vap:Vapar_5571)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (194 amino acids)

>GFF6748 Undecaprenyl-diphosphatase BcrC (EC 3.6.1.27), conveys bacitracin resistance (Variovorax sp. SCN45)
MNALNLALFQWISAGSHPTPWVLAVAIAFALWGSWLCAGIVAVTLWRQRADRAYLLVVSA
AAGATSLLSHAIATALNVPRPFMAGFGPAYIEHASRGSLPSTHAAVMFMVALAFLLRPGL
RRIGVPLLALAALTGWARVYVGVHFPVDIVAGLLLGAVVAGAIAIARWLFLFFVPRTGRA
PGDSPATSSLWRPS