Protein Info for GFF6733 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 36 to 365 (330 residues), 181.7 bits, see alignment E=4.8e-57 PF13433: Peripla_BP_5" amino acids 38 to 389 (352 residues), 65.4 bits, see alignment E=7.6e-22 PF01094: ANF_receptor" amino acids 84 to 360 (277 residues), 64.4 bits, see alignment E=1.5e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (400 amino acids)

>GFF6733 hypothetical protein (Variovorax sp. SCN45)
MLPSNRRHWIKGTATALGAAAVAPQLFAQGSSSGGPVKIGYAIARTGPWAAGAQVSQEPN
YLLWAEQVNAAGGLSVKGTKRPIELIGYDDRSETETCVRTFEKLMGSDKVDLVLPPWGSG
ANFAVAPLANRFGYPLLAPTALSRKLIDMRLPFFFSLLQQPDKMMGALVDMLVSQNVKTI
TIVYMDDLFGLENFAALNNALKKTSIQVLDRKSYPLGVKDLAPVLRTMKDLNPDAFIGIT
YPPDTILASRQAREVGFNPKYFYASVGTAFQLYKNVMAANTEGVIGMGSWNGKTSPEAKA
YFDAHTKKFGKEPDRWASGHAWAGLQILQQAVEKVGLDRKALREQIAKNEFKTILGPIRF
EGSENASIPGTVSQWQGGDFEVVWPKDRATAQLMPKTAWK