Protein Info for PS417_03415 in Pseudomonas simiae WCS417

Annotation: isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 TIGR00654: phenazine biosynthesis protein, PhzF family" amino acids 1 to 257 (257 residues), 139.7 bits, see alignment E=6.5e-45 PF02567: PhzC-PhzF" amino acids 8 to 255 (248 residues), 193.5 bits, see alignment E=2.8e-61

Best Hits

Swiss-Prot: 71% identical to Y2770_PSEAE: Uncharacterized isomerase PA2770 (PA2770) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K06998, (no description) (inferred from 73% identity to pap:PSPA7_2465)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TUP3 at UniProt or InterPro

Protein Sequence (259 amino acids)

>PS417_03415 isomerase (Pseudomonas simiae WCS417)
MKLDIFQVDAFSQSVFGGNPAAVCPLTEWLSDEQLQNIAAENNLSETAYFVPRGEFYELR
WFTPEVEVDLCGHATLAAAWVLIHLLGDAPEVLRFATRSGELRVTRNGDELAMDFPAKQP
QPCEPPDGMLSALGIEQAEVFSTDDYIVLLEDEAQVAALKPDFAHLKGLPKRGIAVTAKS
ARFDFISRWFGPNVGVNEDPVTGSAHTSLAPFWAERLGKSSMTAEQGGTRRGQLRCELKG
DRVIISGHAVLYLQGTIYL