Protein Info for GFF6638 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 114 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 71 to 88 (18 residues), see Phobius details amino acids 94 to 111 (18 residues), see Phobius details PF05437: AzlD" amino acids 9 to 108 (100 residues), 67.4 bits, see alignment E=5.2e-23

Best Hits

KEGG orthology group: None (inferred from 51% identity to mpt:Mpe_A0288)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (114 amino acids)

>GFF6638 no description (Variovorax sp. SCN45)
MHLGHDVYVWLAVGALVGVTVLTRSFFLLPDSEPKLPGWLWRGLRHAPVAALLAMVVPDV
FLSNGRMLADWHDARLFAVAAALTYYLVRRNDVTGTILVGTGTLMLLRLGFGWA