Protein Info for GFF662 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 629 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 63 to 86 (24 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details amino acids 144 to 162 (19 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 224 to 250 (27 residues), see Phobius details amino acids 256 to 280 (25 residues), see Phobius details amino acids 312 to 333 (22 residues), see Phobius details amino acids 339 to 368 (30 residues), see Phobius details amino acids 387 to 407 (21 residues), see Phobius details amino acids 413 to 434 (22 residues), see Phobius details amino acids 458 to 485 (28 residues), see Phobius details amino acids 507 to 527 (21 residues), see Phobius details amino acids 547 to 570 (24 residues), see Phobius details amino acids 582 to 603 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 9 to 277 (269 residues), 115.4 bits, see alignment E=1.3e-37 amino acids 338 to 592 (255 residues), 112.2 bits, see alignment E=1.2e-36

Best Hits

KEGG orthology group: None (inferred from 88% identity to xau:Xaut_4216)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (629 amino acids)

>GFF662 hypothetical protein (Xanthobacter sp. DMC5)
VEFLLVQALSGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAYTLTTRFAGP
LGFWGAIVAAAIIVAILGALMEMVLLRRIYQAPELFQLLATFGVTLMVQDLVVVIWGPED
LLGPRAPGFTGAISLFGRMVPTYDLFMMTLGPVVLGILWLLFHKTRWGVLVRAATQDREM
VAALGVNQKWLFTGVFALGVFLAALGGALQIPRTTVTHAMDLSIIVEVFVVVVIGGLGSV
FGAFVAAIIVAELNAFGILILPQISLITVFLVMAVVLVVRPWGLFGKPESAPRAAAGLTI
RPWRPFTQMERAGVALVVVAVAALPFFLGNYALTVGAEILIYVLFAASLHFMMTVGGLAS
FGHAAYFGLGAYGAAFLVKYMGAPMEAALIVGPLLGLAGAVLFGWFCVRLSGVYFAMLTL
AFAQIAWSIAFQWVDVTGGDNGLLGIWPASWASRPAGFFWLALGIAVVGVAVLRMLVFSP
FGYGLRAVRDSALRSEAIGLNRQRMQWAAFIVAGTFAGLAGALFAFLKGSVFPDYMAIPT
SVDGLVMVLLGGVETVSGAVVGAVLYKALAIWLMSQTDLSKLVLGGVIVVIVLAFPKGVV
GFIEDLRHRWPRKGNGAGAPVGATKAEAA