Protein Info for PS417_03335 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 116 to 116 (1 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 157 to 181 (25 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 246 to 270 (25 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 314 to 334 (21 residues), see Phobius details amino acids 338 to 338 (1 residues), see Phobius details amino acids 341 to 364 (24 residues), see Phobius details amino acids 375 to 395 (21 residues), see Phobius details amino acids 401 to 421 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 22 to 233 (212 residues), 82.8 bits, see alignment E=2.5e-27 PF07690: MFS_1" amino acids 38 to 386 (349 residues), 116.6 bits, see alignment E=1.2e-37

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU0692)

Predicted SEED Role

"L-Proline/Glycine betaine transporter ProP" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U4B7 at UniProt or InterPro

Protein Sequence (429 amino acids)

>PS417_03335 MFS transporter (Pseudomonas simiae WCS417)
MTATFPAQAQRFSRSDYKTLGLAALGGALEIYDFIIFVFFALTLSQLFFPPEMPEWLRLL
QSFGIFVTGYLARPLGGILMAHFADHLGRKRVFSLSILMMALPCLLIGIMPTYAQIGYFA
PLILLALRVLQGAAVGGEVPSAWTFVAEHAPTHHRGYALGFLQAGLTFGYLLGALTATLL
AQVFTPVEILDYAWRFPFLLGGVFGVIGVWLRRWLSETPVFLEMQARRQAAAELPLRTVL
RDHRAVLLPAMILTCVLTSAVVVLVVITPTMMQKTFGMSPSHTFALSALGIVFLNIGCVL
AGLLVDRIGAWRAVLVYSLLLPVGIAVLYASLISGGIWLGAAYAVAGLSCGVVGAVPSVM
VGLFPAQVRVSGISFTYNIAYALWASTTPLLLIALMPTSPWICVGYCVVMGAVGVVSVAL
FGKRHTLAA