Protein Info for GFF651 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 225 to 245 (21 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 281 to 299 (19 residues), see Phobius details PF00892: EamA" amino acids 17 to 148 (132 residues), 44.5 bits, see alignment E=9.7e-16 amino acids 164 to 299 (136 residues), 44.8 bits, see alignment E=7.8e-16

Best Hits

KEGG orthology group: None (inferred from 75% identity to xau:Xaut_4205)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>GFF651 hypothetical protein (Xanthobacter sp. DMC5)
MHAPLPRTDGPLGPRELLLYAVCVLIFGTGWLPLKLQLGVVAPEVSGVWRFAVAGSVMLG
FVLVTGGRLAFGWRDHVLFAGLGATLFSLNFVSFYYAGYHLPSGLMSVIFALSAIIIPVL
SALFLRVPLRRQILGGAVAGVVGLALVFGPSLSEGKGIDGAGEGLALGLAGTFFFSVGSL
LTGVAGRRQYPIASLTTWGFFYGMLVLLGIALVHGVPFRFDWSPVYVGSLACLIIVQTLA
GFAAYNMLVRRIGANRAGYGTVVFPLVALAISTVFEGYHWTLVAAGGIALVLAGVLLVLR
PNPAPPVV